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Aspiring BioinforMAGICIAN
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Aspiring BioinforMAGICIAN

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@databio @fraenkel-lab @campus-experts @NeuroLINCS @PlatigLab
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Hi 👋, I'm Yogindra Raghav (YogiOnBioinformatics)

Bioinformatics/Computational Biology Researcher at MIT and the Broad Institute of MIT and Harvard!



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CAPTAIN. LEADER. ASPIRING SCIENTIST/AUTHOR. PHILOSOPHER.

  • 💬 Ask me about:
Computational Genomics Computational Proteomics
Computational Drug Discovery Web Frontend Development
Data Science Data Engineering
Data Maintenance Containerization
Mentorship Working with Scientists & Consortiums
High-Performance Computing (HPC) Systems Cloud Computing
Bioinformatics Pipeline Creation/Maintenance Free & Open-Source Software (FOSS)

Platforms/Operating Systems

Linux

Google Cloud

Microsoft Azure

Chrome OS

Microsoft Windows

Languages

Python

R

Bash

Java

C++

HTML

CSS

JavaScript

YAML

Markdown

Technologies/Tools

Git

GitHub

GitLab

Jupyter/JupyterLab

Visual Studio Code

Flask

Django

NumPy

SciPy

Pandas

Docker

Singularity

WDL

Terra

Cromwell

Blender

Globus

Tmux

Jekyll

Matplotlib

SLURM









Bioinformatics Databases

NCBI GEO

KEGG

International Human Epigenome Consortium

1000 Genomes

RefSeq

dbSNP

ClinVar

XenBase

antiSmash

Protein Data Bank

UniProt

PubChem

PDBbind

BindingDB

DrugBank

Bioinformatics Tools

NCBI BLAST

UCSC Genome Browser

cutadapt

HISAT2

Bowtie2

Stringtie

featureCounts

DESeq2

samtools

bedtools

NCBI SRATools

MACS

MEME-ChIP

HOMER

IDR

deepTools

Bioconductor

EMBOSS

MEGAX

SWISS-MODEL

FTMap

NAMD

VMD

g:Profiler



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https://dev.to/yogionbioinformatics https://www.linkedin.com/in/yogionbioinformatics/ https://stackoverflow.com/users/10007125/yogionbioinformatics https://orcid.org/0000-0002-1285-6397

Pinned

  1. Computational-Drug-Discovery-Internship-at-Merck Computational-Drug-Discovery-Internship-at-Merck Public

    Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging…

    Python 3 2

  2. Maternal-to-Zygotic-Transition-in-Xenopus-laevis Maternal-to-Zygotic-Transition-in-Xenopus-laevis Public

    Research project undertaken in Computational Genomics at the University of Pittsburgh. with Dr. Miler Lee and students to understand Maternal-to-Zygotic transition in Xenopus laevis

    Shell 1

  3. Teaching-Assistant-Computational-Genomics Teaching-Assistant-Computational-Genomics Public

    Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught…

    Shell 1

  4. Differential-Gene-Expression-Analysis-with-Machine-Learning-Using-Dexamethasone-Treatment-Data Differential-Gene-Expression-Analysis-with-Machine-Learning-Using-Dexamethasone-Treatment-Data Public

    Worked with fellow peers at University of Pittsburgh under supervision of Dr. Junshu Bao, Department of Statistics, University of Pittsburgh, to do a Differential Gene Expression Analysis on a Dexa…

    R 2 2

  5. ProteinVR ProteinVR Public

    Protein Virtual Reality is a University of Pittsburgh project with Dr. Jacob D. Durrant that is the world's first anatomical and protein visualization VR program tailored for collegiate-biology cou…

    Python 3 1

  6. Tumor-Exome-Mutation-Analysis Tumor-Exome-Mutation-Analysis Public

    Statistical analysis on Mutation Annotation Format files from Whole-Exome Sequencing of Tumor samples and Controls.

    Jupyter Notebook 2