Department of Population Medicine, Harvard Medical School and Harvard Pilgrim Health Care
Associate Professor
Department of Population Medicine
Harvard Medical School and Harvard Pilgrim Health Care Institute
Statistical genetics and genomics including high-dimensional statistics, computational statistics, causal inference, Mendelian randomization, and mediation analysis
Publications can be found on Google Scholar.
An R package that examines the ability to use MR to infer the effect direction. On GitHub and implements the method from the following paper:
An R package that examines mediation analysis in the presence of reverse causality. On GitHub and implements the method from the following paper:
An R package that examines expression quantitative trait loci (eQTL) analyses of rare variants for RNA-seq data. On GitHub and implements the method from the following paper:
An R package that performs an empirical power analysis of the interaction of two normally distributed traits in longitudinal unbalanced datasets. On GitHub
and implements the power analysis used in the following paper:
An R package that examines SNP by environment interactions for both common and rare variants. On GitHub
and implements the power analysis used in the following paper:
An R package that examines the role of unmeasured confounding of the exposure-mediator-outcome relationship in mediation analysis. On GitHub
and implements the method from the following paper:
An R package that tests for common and rare variant associations with multiple phenotypes using the Hausdorff metric in a permutation based framework. On GitHub
and implements the method from the following paper:
An R package that adjusts for ascertainment bias when testing for genetic associations of secondary phenotypes in population based studies. On GitHub
and implements the method from the following paper:
An interactive software package for the analysis of population based genetic association studies. On Google Sites and implements the method from the following paper:
An R package that implements a screening step to increase power when testing for direct genetic effects of multiple SNPs in family based association studies using causal inference methodology. On
GitHub
and implements the methods from the following papers:
Lutz SM, Vansteelandt S, Lange C. (2013) Testing for Direct Genetic Effects Using a Screening Step in Family-Based Association Studies. Frontiers in Genetics. 4 (243).
Vansteelandt S, Goetgeluk S, Lutz S, Waldamn I, Lyon H, Schadt EE, Weiss ST, Lange C. (2009) On the Adjustment for Covariates in Genetic Association Analysis: A Novel, Simple Principle to Infer Direct Effects. Genetic Epidemiology. 33(5): 394-405.
An R package that examines the indirect effect of a SNP on the outcome through the mediator in a Bayesian framework with a spike and slab prior. On
GitHub
and implements the method from the following paper:
An R package that examines emperical power to detect a genetic association for dominant, recessive, additive, and co-dominant models. This R package was built as a learning tool for BST 227: Introduction to Statistical Genetics on GitHub.