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Moore J, Basurto-Lozada D, Besson S, Bogovic J, Bragantini J, Brown EM, Burel JM, Casas Moreno X, de Medeiros G, Diel EE, Gault D, Ghosh SS, Gold I, Halchenko YO, Hartley M, Horsfall D, Keller MS, Kittisopikul M, Kovacs G, Küpcü Yoldaş A, Kyoda K, le Tournoulx de la Villegeorges A, Li T, Liberali P, Lindner D, Linkert M, Lüthi J, Maitin-Shepard J, Manz T, Marconato L, McCormick M, Lange M, Mohamed K, Moore W, Norlin N, Ouyang W, Özdemir B, Palla G, Pape C, Pelkmans L, Pietzsch T, Preibisch S, Prete M, Rzepka N, Samee S, Schaub N, Sidky H, Solak AC, Stirling DR, Striebel J, Tischer C, Toloudis D, Virshup I, Walczysko P, Watson AM, Weisbart E, Wong F, Yamauchi KA, Bayraktar O, Cimini BA, Gehlenborg N, Haniffa M, Hotaling N, Onami S, Royer LA, Saalfeld S, Stegle O, Theis FJ, Swedlow JR. OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochem Cell Biol. 2023 Sep;160(3):223-251. doi: 10.1007/s00418-023-02209-1. Epub 2023 Jul 10. PubMed PMID: 37428210; PubMed Central PMCID: PMC10492740.
Watson AM, Vasylieva I, Smith M. Considerations for Microscopic Imaging of Whole Organs and Animals. Microsc Microanal. 2023 Jul 22;29(Supplement_1):2093. doi: 10.1093/micmic/ozad067.1083. PubMed PMID: 37612932.
Molina LM, Krutsenko Y, Jenkins NEC, Smith MC, Tao J, Wheeler TB, Watkins SC, Watson AM, Monga SP. LiverClear: A versatile protocol for mouse liver tissue clearing. STAR Protoc. 2022 Mar 18;3(1):101178. doi: 10.1016/j.xpro.2022.101178. eCollection 2022 Mar 18. PubMed PMID: 35243370; PubMed Central PMCID: PMC8857608.
Molina LM, Zhu J, Li Q, Pradhan-Sundd T, Krutsenko Y, Sayed K, Jenkins N, Vats R, Bhushan B, Ko S, Hu S, Poddar M, Singh S, Tao J, Sundd P, Singhi A, Watkins S, Ma X, Benos PV, Feranchak A, Michalopoulos G, Nejak-Bowen K, Watson A, Bell A, Monga SP. Compensatory hepatic adaptation accompanies permanent absence of intrahepatic biliary network due to YAP1 loss in liver progenitors. Cell Rep. 2021 Jul 6;36(1):109310. doi: 10.1016/j.celrep.2021.109310. PubMed PMID: 34233187; PubMed Central PMCID: PMC8280534.
Ilin VA, Bai Q, Watson AM, Volgushev M, Burton EA. Mechanism of Pacemaker Activity in Zebrafish DC2/4 Dopaminergic Neurons. J Neurosci. 2021 May 5;41(18):4141-4157. doi: 10.1523/JNEUROSCI.2124-20.2021. Epub 2021 Mar 17. PubMed PMID: 33731451; PubMed Central PMCID: PMC8176752.
Bain WG, Peñaloza HF, Ladinsky MS, van der Geest R, Sullivan M, Ross M, Kitsios GD, Methé BA, McVerry BJ, Morris A, Watson AM, Watkins SC, St Croix CM, Stolz DB, Bjorkman PJ, Lee JS. Lower Respiratory Tract Myeloid Cells Harbor SARS-Cov-2 and Display an Inflammatory Phenotype. Chest. 2021 Mar;159(3):963-966. doi: 10.1016/j.chest.2020.10.083. Epub 2020 Nov 18. PubMed PMID: 33217417; PubMed Central PMCID: PMC7671922.
Zhu Y, Sun D, Schertel A, Ning J, Fu X, Gwo PP, Watson AM, Zanetti-Domingues LC, Martin-Fernandez ML, Freyberg Z, Zhang P. Serial cryoFIB/SEM Reveals Cytoarchitectural Disruptions in Leigh Syndrome Patient Cells. Structure. 2021 Jan 7;29(1):82-87.e3. doi: 10.1016/j.str.2020.10.003. Epub 2020 Oct 22. PubMed PMID: 33096015; PubMed Central PMCID: PMC7802768.
Birder LA, Wolf-Johnston A, Wein AJ, Cheng F, Grove-Sullivan M, Kanai AJ, Watson AM, Stoltz D, Watkins SC, Robertson AM, Newman D, Dmochowski RR, Jackson EK. Purine nucleoside phosphorylase inhibition ameliorates age-associated lower urinary tract dysfunctions. JCI Insight. 2020 Oct 15;5(20). doi: 10.1172/jci.insight.140109. PubMed PMID: 32910805; PubMed Central PMCID: PMC7605521.
Bain W, Lee JS, Watson AM, Stitt-Fischer MS. Practical Guidelines for Collection, Manipulation and Inactivation of SARS-CoV-2 and COVID-19 Clinical Specimens. Curr Protoc Cytom. 2020 Jun;93(1):e77. doi: 10.1002/cpcy.77. PubMed PMID: 32502333; PubMed Central PMCID: PMC7300551.
Loewen RT, Waxman S, Wang C, Atta S, Chen S, Watkins SC, Watson AM, Loewen NA. 3D-Reconstruction of the human conventional outflow system by ribbon scanning confocal microscopy. PLoS One. 2020;15(5):e0232833. doi: 10.1371/journal.pone.0232833. eCollection 2020. PubMed PMID: 32421732; PubMed Central PMCID: PMC7233539.
Ghosh S, Stepicheva N, Yazdankhah M, Shang P, Watson AM, Hose S, Liu H, Weiss J, Zigler JS Jr, Valapala M, Watkins SC, Sinha D. The role of lipocalin-2 in age-related macular degeneration (AMD). Cell Mol Life Sci. 2020 Mar;77(5):835-851. doi: 10.1007/s00018-019-03423-8. Epub 2020 Jan 4. Review. PubMed PMID: 31901947; PubMed Central PMCID: PMC7079812.
Ghosh S, Padmanabhan A, Vaidya T, Watson AM, Bhutto IA, Hose S, Shang P, Stepicheva N, Yazdankhah M, Weiss J, Das M, Gopikrishna S, Aishwarya, Yadav N, Berger T, Mak TW, Xia S, Qian J, Lutty GA, Jayagopal A, Zigler JS Jr, Sethu S, Handa JT, Watkins SC, Ghosh A, Sinha D. Neutrophils homing into the retina trigger pathology in early age-related macular degeneration. Commun Biol. 2019;2:348. doi: 10.1038/s42003-019-0588-y. eCollection 2019. PubMed PMID: 31552301; PubMed Central PMCID: PMC6754381.
Williams JJ, Watson AM, Vazquez AL, Schwartz AB. Viral-Mediated Optogenetic Stimulation of Peripheral Motor Nerves in Non-human Primates. Front Neurosci. 2019;13:759. doi: 10.3389/fnins.2019.00759. eCollection 2019. PubMed PMID: 31417342; PubMed Central PMCID: PMC6684788.
Tyurina YY, St Croix CM, Watkins SC, Watson AM, Epperly MW, Anthonymuthu TS, Kisin ER, Vlasova II, Krysko O, Krysko DV, Kapralov AA, Dar HH, Tyurin VA, Amoscato AA, Popova EN, Bolevich SB, Timashev PS, Kellum JA, Wenzel SE, Mallampalli RK, Greenberger JS, Bayir H, Shvedova AA, Kagan VE. Redox (phospho)lipidomics of signaling in inflammation and programmed cell death. J Leukoc Biol. 2019 Jul;106(1):57-81. doi: 10.1002/JLB.3MIR0119-004RR. Epub 2019 May 9. Review. PubMed PMID: 31071242; PubMed Central PMCID: PMC6626990.
Watson AM, Watkins SC. Massive volumetric imaging of cleared tissue: The necessary tools to be successful. Int J Biochem Cell Biol. 2019 Jul;112:76-78. doi: 10.1016/j.biocel.2019.05.007. Epub 2019 May 11. Review. PubMed PMID: 31085331.
Singh M, Tian XJ, Donnenberg VS, Watson AM, Zhang J, Stabile LP, Watkins SC, Xing J, Sant S. Targeting the Temporal Dynamics of Hypoxia-Induced Tumor-Secreted Factors Halts Tumor Migration. Cancer Res. 2019 Jun 1;79(11):2962-2977. doi: 10.1158/0008-5472.CAN-18-3151. Epub 2019 Apr 5. PubMed PMID: 30952634; PubMed Central PMCID: PMC6548579.
Muntifering M, Castranova D, Gibson GA, Meyer E, Kofron M, Watson AM. Clearing for Deep Tissue Imaging. Curr Protoc Cytom. 2018 Oct;86(1):e38. doi: 10.1002/cpcy.38. Epub 2018 Jul 13. PubMed PMID: 30005145; PubMed Central PMCID: PMC6168389.
Sanders SM, Ma Z, Hughes JM, Riscoe BM, Gibson GA, Watson AM, Flici H, Frank U, Schnitzler CE, Baxevanis AD, Nicotra ML. CRISPR/Cas9-mediated gene knockin in the hydroid Hydractinia symbiolongicarpus. BMC Genomics. 2018 Sep 3;19(1):649. doi: 10.1186/s12864-018-5032-z. PubMed PMID: 30176818; PubMed Central PMCID: PMC6122657.
Waxman S, Loewen RT, Dang Y, Watkins SC, Watson AM, Loewen NA. High-Resolution, Three-Dimensional Reconstruction of the Outflow Tract Demonstrates Segmental Differences in Cleared Eyes. Invest Ophthalmol Vis Sci. 2018 May 1;59(6):2371-2380. doi: 10.1167/iovs.17-23075. PubMed PMID: 29847643; PubMed Central PMCID: PMC5939687.
Lane WC, Dunn MD, Gardner CL, Lam LKM, Watson AM, Hartman AL, Ryman KD, Klimstra WB. The Efficacy of the Interferon Alpha/Beta Response versus Arboviruses Is Temperature Dependent. mBio. 2018 Apr 24;9(2). doi: 10.1128/mBio.00535-18. PubMed PMID: 29691338; PubMed Central PMCID: PMC5915735.
Lam LKM, Watson AM, Ryman KD, Klimstra WB. Gamma-interferon exerts a critical early restriction on replication and dissemination of yellow fever virus vaccine strain 17D-204. NPJ Vaccines. 2018;3:5. doi: 10.1038/s41541-017-0039-z. eCollection 2018. PubMed PMID: 29387474; PubMed Central PMCID: PMC5780476.
Watson AM, Rose AH, Gibson GA, Gardner CL, Sun C, Reed DS, Lam LKM, St Croix CM, Strick PL, Klimstra WB, Watkins SC. Ribbon scanning confocal for high-speed high-resolution volume imaging of brain. PLoS One. 2017;12(7):e0180486. doi: 10.1371/journal.pone.0180486. eCollection 2017. PubMed PMID: 28686653; PubMed Central PMCID: PMC5501561.
Watson AM, Klimstra WB. T Cell-Mediated Immunity towards Yellow Fever Virus and Useful Animal Models. Viruses. 2017 Apr 11;9(4). doi: 10.3390/v9040077. Review. PubMed PMID: 28398253; PubMed Central PMCID: PMC5408683.
Troupin A, Shirley D, Londono-Renteria B, Watson AM, McHale C, Hall A, Hartstone-Rose A, Klimstra WB, Gomez G, Colpitts TM. A Role for Human Skin Mast Cells in Dengue Virus Infection and Systemic Spread. J Immunol. 2016 Dec 1;197(11):4382-4391. doi: 10.4049/jimmunol.1600846. Epub 2016 Oct 31. PubMed PMID: 27799312.
Tree MO, McKellar DR, Kieft KJ, Watson AM, Ryman KD, Conway MJ. Insect-specific flavivirus infection is restricted by innate immunity in the vertebrate host. Virology. 2016 Oct;497:81-91. doi: 10.1016/j.virol.2016.07.005. Epub 2016 Jul 21. PubMed PMID: 27433779.
Conway MJ, Londono-Renteria B, Troupin A, Watson AM, Klimstra WB, Fikrig E, Colpitts TM. Aedes aegypti D7 Saliva Protein Inhibits Dengue Virus Infection. PLoS Negl Trop Dis. 2016 Sep;10(9):e0004941. doi: 10.1371/journal.pntd.0004941. eCollection 2016 Sep. PubMed PMID: 27632170; PubMed Central PMCID: PMC5025043.
Watson AM, Lam LK, Klimstra WB, Ryman KD. The 17D-204 Vaccine Strain-Induced Protection against Virulent Yellow Fever Virus Is Mediated by Humoral Immunity and CD4+ but not CD8+ T Cells. PLoS Pathog. 2016 Jul;12(7):e1005786. doi: 10.1371/journal.ppat.1005786. eCollection 2016 Jul. PubMed PMID: 27463517; PubMed Central PMCID: PMC4962991.
Sun C, Gardner CL, Watson AM, Ryman KD, Klimstra WB. Stable, high-level expression of reporter proteins from improved alphavirus expression vectors to track replication and dissemination during encephalitic and arthritogenic disease. J Virol. 2014 Feb;88(4):2035-46. doi: 10.1128/JVI.02990-13. Epub 2013 Dec 4. PubMed PMID: 24307590; PubMed Central PMCID: PMC3911548.
Conway MJ, Watson AM, Colpitts TM, Dragovic SM, Li Z, Wang P, Feitosa F, Shepherd DT, Ryman KD, Klimstra WB, Anderson JF, Fikrig E. Mosquito saliva serine protease enhances dissemination of dengue virus into the mammalian host. J Virol. 2014 Jan;88(1):164-75. doi: 10.1128/JVI.02235-13. Epub 2013 Oct 16. PubMed PMID: 24131723; PubMed Central PMCID: PMC3911723.
Watson AM, Mylin LM, Thompson MM, Schell TD. Modification of a tumor antigen determinant to improve peptide/MHC stability is associated with increased immunogenicity and cross-priming a larger fraction of CD8+ T cells. J Immunol. 2012 Dec 15;189(12):5549-60. doi: 10.4049/jimmunol.1102221. Epub 2012 Nov 21. PubMed PMID: 23175697; PubMed Central PMCID: PMC3536056.
Tatum AM, Watson AM, Schell TD. Direct presentation regulates the magnitude of the CD8+ T cell response to cell-associated antigen through prolonged T cell proliferation. J Immunol. 2010 Sep 1;185(5):2763-72. doi: 10.4049/jimmunol.0903920. Epub 2010 Jul 26. PubMed PMID: 20660711; PubMed Central PMCID: PMC2924944.
Tagaram HR, Watson AM, Lemonnier FA, Staveley-O'Carroll K, Tevethia SS, Schell TD. An SV40 VP1-derived epitope recognized by CD8+ T cells is naturally processed and presented by HLA-A*0201 and cross-reactive with human polyomavirus determinants. Virology. 2008 Jun 20;376(1):183-90. doi: 10.1016/j.virol.2008.02.033. Epub 2008 Apr 10. PubMed PMID: 18402997; PubMed Central PMCID: PMC2464359.
Deitrich S, Czech J, Ropelewski A, Wetzel AW, Hood G, Simmel D, Bruchez M, Watkins SC, Watson AM. Applying iRODS to the Brain Image Library. Proceedings of the Practice and Experience on Advanced Research Computing. PEARC '18; 2018.
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